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Job description
Job Description:
Organization
Médecins Sans Frontières Belgium
Job Title
EPIDEMIOLOGY ACTIVITY MANAGER
Location
Khartoum
Section/Unit
Medical & Paramedical
No. of Posts
1
Grade Level
Level 10
Supervisor
Country Medical Coordinator/ Project Medical Coordinator
Closing Date
20 Sept 2026
Defining, coordinating and monitoring the epidemiological activities, ensuring the development of appropriate methodology and the quality of studies according to MSF protocols, standards and procedures in order to identify risk factors for diseases and to determine the optimal treatment approaches to clinical practice and the preventive medicine to be used in the missions.
Duties and Responsibilities:
Defining, scheduling and organizing, in close collaboration with other medical team members, the annual epidemiological activity plan as well as its associated budget, in order to improve early detection of risk factors to better define treatment approaches and preventive practices. Leading the implementation of the protocols and epidemiological methodology, ensuring all related staff follows them in order to improve research efficiency.
Supervising, according to annual plan, the epidemiological research activity ensuring that contacts with community groups and authorities are aligned with the objectives of the research and that the population participating in the research is properly informed. Reporting on the progress of data collection, on ongoing analysis of research or on any issue causing delay, in order to achieve epidemiological goals on time.
Advising the MSF medical team on epidemiological matters that arise in the course of their activity research, and when necessary, designing and implementing epidemiological tools and data collection to meet new epidemiological needs.
Ensuring, in coordination with logistics department, that national or international shipment of laboratory samples acquired for research purposes is done within datelines and according to protocols, following security rules and keeping conditions needed for the sample
Supervising data filing procedures, ensuring that all epidemiology software tools are properly used and are updated regularly, in order to ensure full data traceability and availability
Planning and supervising, in close coordination with the HR department and the MSF vision, policies and values, the associated processes (job description, recruitment, training, performance evaluation, development and internal/external communication) of the epidemiological staff in order to ensure both the sizing and the amount of knowledge required, to improve staff technical capabilities, contribution and commitment to MSF values.
Supervising, in close coordination with the Logistic Manager that research equipment and materials are properly maintained and stock level is above minimum point in order to ensure availability and research activity continuity.
Participating in operational monthly reports and organizing and/or assisting medical staff in preparing epidemiological reports related to health facilities and to researched areas.
General Objective:
The Mission Epidemiologist Activity Manager is responsible for the design, implementation, and oversight of epidemiological activities across the mission. The role ensures the availability of high-quality data for operational decision-making, supports outbreak detection and response, strengthens surveillance systems, and contributes to evidence generation and capacity building in line with MSF principles.
Ensure continuous generation of high-quality epidemiological data to inform operational decision-making.
Key responsibilities:
Design, implement, and maintain routine monitoring/Health Information systems (mortality, morbidity, nutrition, program indicators, etc.) using standard MSF OCB tools (DHIS2, PBI, etc.)
Ensure data quality assurance (completeness, timeliness, accuracy) across all projects
Develop and monitor key indicators aligned with mission objectives (medical, nutrition, WASH, etc. where relevant)
Conduct regular data analysis and interpretation to identify trends and anomalies
Produce weekly, monthly, and ad hoc epidemiological reports
Support projects in data-driven decision-making and program adaptation
Strengthen integration between medical, nutrition, and community-level data systems
Lead early detection and effective response to epidemics and public health events.
Key responsibilities:
Establish and maintain surveillance (event-based, indicator-based) & early warning systems (EWS), including alert thresholds and verification mechanisms in the projects and coordination
Ensure timely detection, validation, and reporting of alerts (integrating alerts into surveillance systems)
Lead or support outbreak investigations (data collection, descriptive epidemiology, hypothesis generation, risk factor analysis)
Coordinate rapid response activities in collaboration with medical, WASH, and coordination teams
Support development and updating of Emergency Preparedness & Response Plans (EPREP)
Integrate nutritional and food security surveillance (GAM, SAM trends, MUAC screening data, etc.) into outbreak risk analysis
Monitor outbreak evolution and evaluate response effectiveness
Provide evidence for strategic planning through targeted epidemiological assessments.
Key responsibilities:
Lead or support the design and implementation of epidemiological surveys (SMART, vaccination coverage, mortality surveys, KAP, etc.) and Operational Research activities
Lead or support rapid health and nutrition assessments in emergencies or new project areas
Contribute to context analysis and risk profiling (seasonality, displacement, disease patterns)
Ensure proper survey/study protocol development, sampling methodologies, data collection tools, analysis and report/manuscript writing
Translate findings into actionable recommendations for operations
Support scenario planning and preparedness activities bas
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